PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468899.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 1240aa    MW: 138758 Da    PI: 9.1645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468899.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001611241149123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      y C    C++sFs+k +L  H ++ +
  XP_016468899.1 1124 YHCDleGCSMSFSTKQELSLHKKNvC 1149
                      889999***************99866 PP

2zf-C2H2110.001311481171223
                      EET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                      +Cp   C+k F ++ +L++H r+H
  XP_016468899.1 1148 VCPveGCKKKFFSHKYLVQHRRVH 1171
                      69999*****************99 PP

3zf-C2H212.20.0005712071233123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C+   Cg++F+  s++ rH r+  H
  XP_016468899.1 1207 YVCTesGCGQTFRFVSDFSRHKRKtgH 1233
                      99********************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005453.6E-161960IPR003349JmjN domain
PROSITE profilePS5118314.9912061IPR003349JmjN domain
PfamPF023752.1E-152154IPR003349JmjN domain
PROSITE profilePS5118431.698180349IPR003347JmjC domain
SMARTSM005581.8E-49180349IPR003347JmjC domain
SuperFamilySSF511971.04E-24194338No hitNo description
PfamPF023732.9E-37213332IPR003347JmjC domain
SMARTSM003551111241146IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.6E-511451175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01211471171IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.85E-511471184No hitNo description
PROSITE profilePS5015711.57211471176IPR007087Zinc finger, C2H2
PROSITE patternPS00028011491171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-811761201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74111771206IPR007087Zinc finger, C2H2
SMARTSM003550.001411771201IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011791201IPR007087Zinc finger, C2H2
SuperFamilySSF576672.78E-911871229No hitNo description
Gene3DG3DSA:3.30.160.602.0E-912021230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1612071233IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.90712071238IPR007087Zinc finger, C2H2
PROSITE patternPS00028012091233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1240 aa     Download sequence    Send to blast
MAEASGNIEV FPWLKTLPVA PEYHPTLEEF QDPIAYIFKI EKEASKYGIC KIVPPVPAPP  60
KKTALAYLNR SLSARSGSNG GPTFTTRQQQ IGFCPRKHRP VKKPVWQSGE NYTVQEFQAK  120
AKAFEKNYLK KNFKKALTSP LEIETLYWKA TVDKPFSVEY ANDMPGSAFA PKKVGNAVTT  180
LADTEWNMRG VSRAKGSLLK FMKEEIPGVT SPMVYLAMMF SWFAWHVEDH DLHSLNYLHM  240
GAGKTWYGVP RDAAVAFEEV IRVHGYAGET NPLVTFATLG EKTTVMSPEV LLSAGIPCCR  300
LVQNAGDFVI TFPRAYHSGF SHGFNCGEAS NIATPGWLIV AKDAAIRRAS INCPPMVSHF  360
QLLYDLALSL CSRVPKNTRI EPRSSRLKDK KKSEGDMLVK ELFVEDLNCN NYLLHILGEG  420
SPVVLLPQHY SGISIGSNSV AGSQLKVNSR FPSISSPDHE VKSKTDSASD ALMLGRKQRM  480
KQLASVSLEK GKHSSWHAGN RLPESGRDEA ESSPETERGN LDPARGLTYR CDTLSEHGLF  540
SCVTCGILCY TCVAIIQPTE AAAHHLMSSD YRNFNDWTGN VGGVTATSRD DAAESDSSSG  600
WLVKRAPGGL IDVSIESSDR IRKLNNERVG VLSSTKARKE TSSLSLLALN YANSSDSDED  660
EVEANIPVEA CESRHMDFED EVSLRVIDPY ANHRQRRAVS DGRNCQSLDN SIHLESENPP  720
PGESNTLPDR SRHQLRSHQV GANCIPFSHR GEIANSDRVA PFDNGPMQFT STSDEDSFRI  780
HVFCLQHAVQ IEEQLRQVGG VHISLLCHPD YPKLEAQAKK MAEELGRDHF WREISFREAT  840
KEDEEMIQSA LEVEEAIHGN GDWTVKLDIN LFYSANLSRS PLYSKQMPCN FIIYNAFGRS  900
SPDEKSEYTG TGRGSGKQKR AVVAGKWCGK VWMSSQVHPL LAERRDTDEE QQQNNNIIST  960
RVKPEVKSER PCEMTPTGKT VARTGKKRKS RVENKRNSKL LIADDSSVSD VPQQQRKTNL  1020
RSKRIKYETP EPKEEDVDKK KRIGSPINDD PDGGPSTRLR KRMLKPSKES LVKSRPAPIK  1080
QQNESKKAEK GSKVKIPSAN SNSKKDPVMK ANTSKKMKDK EGEYHCDLEG CSMSFSTKQE  1140
LSLHKKNVCP VEGCKKKFFS HKYLVQHRRV HMDDRPLKCP WKGCKMTFKW AWARTEHIRV  1200
HTGARPYVCT ESGCGQTFRF VSDFSRHKRK TGHISKKGRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4igo_A4e-531633312360Os05g0196500 protein
4igp_A4e-531633312360Os05g0196500 protein
4igq_A4e-531633312360Os05g0196500 protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468899.10.0PREDICTED: lysine-specific demethylase REF6-like isoform X1
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLM1B7Y20.0M1B7Y2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000392240.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49882331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6